http://ntcnp.org/twiki/bin/view/VCell The VCell web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise. en-us Copyright 2008 by contributing authors Ion Moraru [moraru@neuron.uchc.edu] The contributing authors of TWiki TWiki http://ntcnp.org/twiki/bin/view/VCell http://ntcnp.org/twiki/pub/TWiki/TWikiLogos/T-logo-140x40-t.gif http://ntcnp.org/twiki/bin/view/VCell/Screenshots Virtual Frap 0.8 Beta screeshots Virtual Frap User Interface: 1. ROI Toolbox #8211; To assist on automatically defining ROIs and plotting ROI time course ... (last changed by TracyLi) 2008-10-24T22:01:46Z TracyLi http://ntcnp.org/twiki/bin/view/VCell/VFRAP Virtual FRAP tool (VFRAP) Home Page Introduction Flourescence Photobleaching Modern confocal microscopes provide the ability to perform a variety of fluorescence ... (last changed by TracyLi) 2008-10-24T21:38:42Z TracyLi http://ntcnp.org/twiki/bin/view/VCell/MicroFilaments Actin Microfilaments Detector. Our task was to design and implement a software application able to process sets of images of biological structures within a cell, discriminate ... (last changed by AnnCowan) 2008-10-09T13:27:05Z AnnCowan http://ntcnp.org/twiki/bin/view/VCell/BioModels under construction... VCDB Curation Putting public models from VCDB into BMDB... List of public VC models to be curated/submitted to BMDB Model BioModel ... (last changed by HarishDharuri) 2008-09-05T00:01:11Z HarishDharuri http://ntcnp.org/twiki/bin/view/VCell/SBMLFeatureToolMatrix Table of SBML language features and which tools support them Tool Algebraic Rules Rate Rules Assigment Rules Events Delay Time Function ... (last changed by IonMoraru) 2008-08-28T09:19:23Z IonMoraru http://ntcnp.org/twiki/bin/view/VCell/SbmlConverter The Virtual Cell SBML Converter SBMLConverter is a command line program used to convert SBML files to VCML and vice versa (import SBML files to VCML and export ... (last changed by AkiraFunahashi) 2008-08-26T21:14:18Z AkiraFunahashi http://ntcnp.org/twiki/bin/view/VCell/SpatialSBML One of the SBML Level 3 Efforts is to add ways of representing the 2D and 3D spatial characteristics of models, the geometry of compartments, the diffusion properties ... (last changed by JimSchaff) 2008-08-25T17:36:20Z JimSchaff http://ntcnp.org/twiki/bin/view/VCell/WebHome Coding and docs The VCell project Sourceforge page The VCML specification: VcmlSpec Link to Virtual Cell SBML Converter Virtual Cell/MIRIAM annotations ... (last changed by TracyLi) 2008-08-22T17:47:34Z TracyLi http://ntcnp.org/twiki/bin/view/VCell/LIYE (last changed by TracyLi) 2008-08-21T20:00:57Z TracyLi http://ntcnp.org/twiki/bin/view/VCell/VM Virtual Microscopy Home JimSchaff 20 Aug 2008 (last changed by JimSchaff) 2008-08-20T21:08:07Z JimSchaff http://ntcnp.org/twiki/bin/view/VCell/UserFeedback These pages are dedicated to user feedback and input. The developers of the Virtual Cell take seriously the needs of their users. These pages are one way users can ... (last changed by RaquellHOlmes) 2008-07-15T22:52:20Z RaquellHOlmes http://ntcnp.org/twiki/bin/view/VCell/SBPAXUnifiesAll Towards unifying systems biology using pathway data in BioPAX format for SBML simulators Oliver Ruebenacker, Ion I. Moraru and Michael L. Blinov ... (last changed by OliverRuebenacker) 2008-05-26T22:50:42Z OliverRuebenacker http://ntcnp.org/twiki/bin/view/VCell/SBPAXUnifies Towards unifying systems biology using pathway data in BioPAX format for SBML simulators Thousands of biochemical interactions are available in the Biological Pathways ... (last changed by OliverRuebenacker) 2008-05-26T21:40:42Z OliverRuebenacker http://ntcnp.org/twiki/bin/view/VCell/SBPAX SBPAX (pronounce: SY Bee Pucks) is short for Systems Biology Pathway Exchange. It is an RDF/OWL schema serving as a glue to integrate SBML/VCML type models with BioPAX ... (last changed by OliverRuebenacker) 2008-05-26T21:14:59Z OliverRuebenacker http://ntcnp.org/twiki/bin/view/VCell/Discussions Conference call 4/23/2008 Attendees : Ion, Harish, Jim, Anu. Topic : MIRIAM/Parameter annotations, etc. MIRIAM Annotations Presently, 'Add annotation' shows ... (last changed by AnuradhaLakshminarayana) 2008-04-24T21:58:38Z AnuradhaLakshminarayana http://ntcnp.org/twiki/bin/view/VCell/Sybil Sybil is short for Systems Biology Linker. It is a software currently able to load BioPAX data, analyze them and display them in a graph which can be customized in ... (last changed by OliverRuebenacker) 2008-03-28T02:32:53Z OliverRuebenacker