<?xml version="1.0" encoding="UTF-8"?>
<!--This mathmodel was generated in VCML Version 0.4-->
<vcml xmlns="http://sourceforge.net/projects/vcell/vcml" Version="0.4">
   <MathModel Name="DIFF_F-N_MODEL">
      <Geometry Name="AXON" Dimension="2">
         <Extent X="1.0" Y="0.5" Z="10.0" />
         <Origin X="0.0" Y="0.0" Z="0.0" />
         <SubVolume Name="subVolume1" Handle="0" Type="Analytical" KeyValue="31864148">
            <AnalyticExpression>1.0</AnalyticExpression>
         </SubVolume>
         <SurfaceDescription NumSamplesX="101" NumSamplesY="101" NumSamplesZ="1" CutoffFrequency="0.3">
            <VolumeRegion Name="subVolume10" RegionID="0" SubVolume="subVolume1" Size="0.5" Unit="um2" />
         </SurfaceDescription>
         <Version Name="AXON" KeyValue="31864144" BranchId="31864145" Archived="0" Date="11-Feb-2009 15:30:21" FromVersionable="false">
            <Owner Name="satarupa" Identifier="29129705" />
            <GroupAccess Type="1" />
         </Version>
      </Geometry>
      <MathDescription Name="NoName">
         <Constant Name="C_init">0.0</Constant>
         <Constant Name="I">0.0</Constant>
         <Constant Name="V_diffusionRate">3.0E-4</Constant>
         <VolumeVariable Name="C" />
         <VolumeVariable Name="V" />
         <Function Name="J1">(I + (V * (0.2 - V) * (-1.0 + V)) - C)</Function>
         <Function Name="J2">(0.0020 * (V - C))</Function>
         <Function Name="V_init">(0.5 * ((1.0 - x) ^ 2.0))</Function>
         <CompartmentSubDomain Name="subVolume1" Priority="0">
            <BoundaryType Boundary="Xm" Type="Flux" />
            <BoundaryType Boundary="Xp" Type="Flux" />
            <BoundaryType Boundary="Ym" Type="Flux" />
            <BoundaryType Boundary="Yp" Type="Flux" />
            <BoundaryType Boundary="Zm" Type="Value" />
            <BoundaryType Boundary="Zp" Type="Value" />
            <OdeEquation Name="C" SolutionType="Unknown">
               <Rate>J2</Rate>
               <Initial>C_init</Initial>
            </OdeEquation>
            <PdeEquation Name="V" SolutionType="Unknown">
               <Boundaries Xm="0.0" Xp="0.0" />
               <Rate>J1</Rate>
               <Diffusion>V_diffusionRate</Diffusion>
               <Initial>V_init</Initial>
            </PdeEquation>
         </CompartmentSubDomain>
         <Version Name="NoName" KeyValue="31864262" BranchId="31864263" Archived="0" Date="11-Feb-2009 15:41:42" FromVersionable="false">
            <Owner Name="satarupa" Identifier="29129705" />
            <GroupAccess Type="1" />
         </Version>
      </MathDescription>
      <Simulation Name="Simulation0">
         <SolverTaskDescription TaskType="Unsteady" UseSymbolicJacobian="false" Solver="Finite Volume, Regular Grid">
            <TimeBound StartTime="0.0" EndTime="100.0" />
            <TimeStep DefaultTime="0.1" MinTime="1.0E-8" MaxTime="1.0" />
            <ErrorTolerance Absolut="1.0E-9" Relative="1.0E-9" />
            <OutputOptions KeepEvery="1" KeepAtMost="1000" />
         </SolverTaskDescription>
         <MathOverrides>
            <Constant Name="I" ConstantArraySpec="1000">0.0, 0.05, 0.1, 0.2</Constant>
         </MathOverrides>
         <MeshSpecification>
            <Size X="143" Y="71" Z="1" />
         </MeshSpecification>
         <Version Name="Simulation0" KeyValue="31864265" BranchId="31864266" Archived="0" Date="11-Feb-2009 15:41:42" FromVersionable="false">
            <Owner Name="satarupa" Identifier="29129705" />
            <GroupAccess Type="1" />
         </Version>
      </Simulation>
      <Simulation Name="Simulation1">
         <SolverTaskDescription TaskType="Unsteady" UseSymbolicJacobian="false" Solver="Finite Volume, Regular Grid">
            <TimeBound StartTime="0.0" EndTime="1000.0" />
            <TimeStep DefaultTime="0.1" MinTime="1.0E-8" MaxTime="1.0" />
            <ErrorTolerance Absolut="1.0E-9" Relative="1.0E-9" />
            <OutputOptions KeepEvery="1" KeepAtMost="1000" />
         </SolverTaskDescription>
         <MathOverrides>
            <Constant Name="I">0.2</Constant>
         </MathOverrides>
         <MeshSpecification>
            <Size X="143" Y="71" Z="1" />
         </MeshSpecification>
         <Version Name="Simulation1" KeyValue="31864428" BranchId="31864415" Archived="0" Date="11-Feb-2009 16:04:22" FromVersionable="false">
            <Owner Name="satarupa" Identifier="29129705" />
            <GroupAccess Type="1" />
         </Version>
      </Simulation>
      <Version Name="DIFF_F-N_MODEL" KeyValue="31864430" BranchId="31864269" Archived="0" Date="11-Feb-2009 16:04:22" FromVersionable="false">
         <Owner Name="satarupa" Identifier="29129705" />
         <GroupAccess Type="1" />
      </Version>
   </MathModel>
</vcml>

