<?xml version="1.0" encoding="UTF-8"?>
<!--This biomodel was generated in VCML Version 0.4-->
<vcml xmlns="http://sourceforge.net/projects/vcell/vcml" Version="0.4">
   <BioModel Name="reactor">
      <Annotation>cloned from 'reactor' owned by user satarupa
</Annotation>
      <Model Name="unnamed">
         <Annotation>cloned from 'unnamed' owned by user satarupa
</Annotation>
         <Compound Name="A" />
         <Compound Name="B" />
         <Feature Name="Reactor" KeyValue="33248865" />
         <LocalizedCompound Name="A_Reactor" CompoundRef="A" Structure="Reactor" OverrideName="false" KeyValue="33248867" />
         <LocalizedCompound Name="B_Reactor" CompoundRef="B" Structure="Reactor" OverrideName="false" KeyValue="33248868" />
         <SimpleReaction Structure="Reactor" Name="reaction0" FluxCarrierValence="0" FluxOption="MolecularOnly" KeyValue="33248869">
            <Reactant LocalizedCompoundRef="A_Reactor" Stoichiometry="1" KeyValue="33248870" />
            <Product LocalizedCompoundRef="B_Reactor" Stoichiometry="1" KeyValue="33248871" />
            <Kinetics KineticsType="GeneralKinetics">
               <Parameter Name="J" Role="reaction rate" Unit="uM.s-1">(A_Reactor - (k * B_Reactor))</Parameter>
               <Parameter Name="k" Role="user defined" Unit="s-1">1.0</Parameter>
            </Kinetics>
            <Annotation />
         </SimpleReaction>
         <Diagram Name="Unnamed compartment" Structure="Reactor">
            <LocalizedCompoundShape LocalizedCompoundRef="A_Reactor" LocationX="53" LocationY="104" />
            <LocalizedCompoundShape LocalizedCompoundRef="B_Reactor" LocationX="328" LocationY="90" />
            <SimpleReactionShape SimpleReactionRef="reaction0" LocationX="210" LocationY="100" />
         </Diagram>
         <Version Name="unnamed" KeyValue="33248860" BranchId="33248861" Archived="0" Date="17-May-2009 20:17:56" FromVersionable="false">
            <Owner Name="Education" Identifier="30625624" />
            <GroupAccess Type="1" />
            <Annotation>cloned from 'unnamed' owned by user satarupa
</Annotation>
         </Version>
      </Model>
      <SimulationSpec Name="compartmental" Stochastic="false" UseConcentration="true">
         <Annotation>cloned from 'compartmental' owned by user satarupa
</Annotation>
         <Geometry Name="non-spatial777237370" Dimension="0">
            <Annotation>cloned from 'non-spatial777237370' owned by user satarupa
</Annotation>
            <Extent X="10.0" Y="10.0" Z="10.0" />
            <Origin X="0.0" Y="0.0" Z="0.0" />
            <SubVolume Name="Compartment" Handle="0" Type="Compartmental" KeyValue="33248856" />
            <Version Name="non-spatial777237370" KeyValue="33248852" BranchId="33248853" Archived="0" Date="17-May-2009 20:17:56" FromVersionable="false">
               <Owner Name="Education" Identifier="30625624" />
               <GroupAccess Type="1" />
               <Annotation>cloned from 'non-spatial777237370' owned by user satarupa
</Annotation>
            </Version>
         </Geometry>
         <GeometryContext>
            <FeatureMapping Feature="Reactor" SubVolume="Compartment" Resolved="false" Size="1.0">
               <BoundariesTypes Xm="Flux" Xp="Flux" Ym="Flux" Yp="Flux" Zm="Flux" Zp="Flux" />
            </FeatureMapping>
         </GeometryContext>
         <ReactionContext>
            <LocalizedCompoundSpec LocalizedCompoundRef="A_Reactor" ForceConstant="false" EnableDiffusion="true">
               <InitialConcentration>10.0</InitialConcentration>
               <Diffusion>0.0</Diffusion>
            </LocalizedCompoundSpec>
            <LocalizedCompoundSpec LocalizedCompoundRef="B_Reactor" ForceConstant="false" EnableDiffusion="true">
               <InitialConcentration>0.0</InitialConcentration>
               <Diffusion>0.0</Diffusion>
            </LocalizedCompoundSpec>
            <ReactionSpec ReactionStepRef="reaction0" ReactionMapping="included" />
         </ReactionContext>
         <MathDescription Name="compartmental_generated">
            <Annotation>cloned from 'compartmental_generated' owned by user satarupa
</Annotation>
            <Constant Name="_F_">96480.0</Constant>
            <Constant Name="_F_nmol_">9.648E-5</Constant>
            <Constant Name="_K_GHK_">1.0E-9</Constant>
            <Constant Name="_N_pmol_">6.02E11</Constant>
            <Constant Name="_R_">8314.0</Constant>
            <Constant Name="_T_">300.0</Constant>
            <Constant Name="A_Reactor_init">10.0</Constant>
            <Constant Name="B_Reactor_init">0.0</Constant>
            <Constant Name="k">1.0</Constant>
            <Constant Name="K_millivolts_per_volt">1000.0</Constant>
            <Constant Name="KMOLE">0.0016611295681063123</Constant>
            <Constant Name="Size_Reactor">1.0</Constant>
            <VolumeVariable Name="B_Reactor" />
            <Function Name="A_Reactor">(K_A_Reactor_total - B_Reactor)</Function>
            <Function Name="J_reaction0">(A_Reactor - (k * B_Reactor))</Function>
            <Function Name="K_A_Reactor_total">(A_Reactor_init + B_Reactor_init)</Function>
            <CompartmentSubDomain Name="Compartment">
               <BoundaryType Boundary="Xm" Type="Value" />
               <BoundaryType Boundary="Xp" Type="Value" />
               <BoundaryType Boundary="Ym" Type="Value" />
               <BoundaryType Boundary="Yp" Type="Value" />
               <BoundaryType Boundary="Zm" Type="Value" />
               <BoundaryType Boundary="Zp" Type="Value" />
               <OdeEquation Name="B_Reactor" SolutionType="Unknown">
                  <Rate>J_reaction0</Rate>
                  <Initial>B_Reactor_init</Initial>
               </OdeEquation>
            </CompartmentSubDomain>
            <Version Name="compartmental_generated" KeyValue="33248857" BranchId="33248858" Archived="0" Date="17-May-2009 20:17:56" FromVersionable="false">
               <Owner Name="Education" Identifier="30625624" />
               <GroupAccess Type="1" />
               <Annotation>cloned from 'compartmental_generated' owned by user satarupa
</Annotation>
            </Version>
         </MathDescription>
         <Simulation Name="Simulation0">
            <Annotation>cloned from 'Simulation0' owned by user satarupa
k=1
</Annotation>
            <SolverTaskDescription TaskType="Unsteady" UseSymbolicJacobian="false" Solver="IDA (Variable Order, Variable Time Step, ODE/DAE)">
               <TimeBound StartTime="0.0" EndTime="1.0" />
               <TimeStep DefaultTime="0.1" MinTime="1.0E-8" MaxTime="1.0" />
               <ErrorTolerance Absolut="1.0E-9" Relative="1.0E-9" />
               <OutputOptions KeepEvery="1" KeepAtMost="1000" />
            </SolverTaskDescription>
            <MathOverrides />
            <Version Name="Simulation0" KeyValue="33248880" BranchId="33248881" Archived="0" Date="17-May-2009 20:17:57" FromVersionable="false">
               <Owner Name="Education" Identifier="30625624" />
               <GroupAccess Type="1" />
               <Annotation>cloned from 'Simulation0' owned by user satarupa
k=1
</Annotation>
            </Version>
         </Simulation>
         <Simulation Name="Simulation1">
            <Annotation>cloned from 'Simulation1' owned by user satarupa
</Annotation>
            <SolverTaskDescription TaskType="Unsteady" UseSymbolicJacobian="false" Solver="IDA (Variable Order, Variable Time Step, ODE/DAE)">
               <TimeBound StartTime="0.0" EndTime="1.0" />
               <TimeStep DefaultTime="0.1" MinTime="1.0E-8" MaxTime="1.0" />
               <ErrorTolerance Absolut="1.0E-9" Relative="1.0E-9" />
               <OutputOptions KeepEvery="1" KeepAtMost="1000" />
            </SolverTaskDescription>
            <MathOverrides>
               <Constant Name="k">0.0</Constant>
            </MathOverrides>
            <Version Name="Simulation1" KeyValue="33248883" BranchId="33248884" Archived="0" Date="17-May-2009 20:17:57" FromVersionable="false">
               <Owner Name="Education" Identifier="30625624" />
               <GroupAccess Type="1" />
               <Annotation>cloned from 'Simulation1' owned by user satarupa
</Annotation>
            </Version>
         </Simulation>
         <Simulation Name="Simulation2">
            <Annotation>cloned from 'Simulation2' owned by user satarupa
k=1</Annotation>
            <SolverTaskDescription TaskType="Unsteady" UseSymbolicJacobian="false" Solver="IDA (Variable Order, Variable Time Step, ODE/DAE)">
               <TimeBound StartTime="0.0" EndTime="10.0" />
               <TimeStep DefaultTime="0.1" MinTime="1.0E-8" MaxTime="1.0" />
               <ErrorTolerance Absolut="1.0E-9" Relative="1.0E-9" />
               <OutputOptions KeepEvery="1" KeepAtMost="1000" />
            </SolverTaskDescription>
            <MathOverrides />
            <Version Name="Simulation2" KeyValue="33248886" BranchId="33248887" Archived="0" Date="17-May-2009 20:17:57" FromVersionable="false">
               <Owner Name="Education" Identifier="30625624" />
               <GroupAccess Type="1" />
               <Annotation>cloned from 'Simulation2' owned by user satarupa
k=1</Annotation>
            </Version>
         </Simulation>
         <Simulation Name="Simulation3">
            <Annotation>cloned from 'Simulation3' owned by user satarupa
</Annotation>
            <SolverTaskDescription TaskType="Unsteady" UseSymbolicJacobian="false" Solver="IDA (Variable Order, Variable Time Step, ODE/DAE)">
               <TimeBound StartTime="0.0" EndTime="10.0" />
               <TimeStep DefaultTime="0.1" MinTime="1.0E-8" MaxTime="1.0" />
               <ErrorTolerance Absolut="1.0E-9" Relative="1.0E-9" />
               <OutputOptions KeepEvery="1" KeepAtMost="1000" />
            </SolverTaskDescription>
            <MathOverrides>
               <Constant Name="k">0.5</Constant>
            </MathOverrides>
            <Version Name="Simulation3" KeyValue="33248889" BranchId="33248890" Archived="0" Date="17-May-2009 20:17:57" FromVersionable="false">
               <Owner Name="Education" Identifier="30625624" />
               <GroupAccess Type="1" />
               <Annotation>cloned from 'Simulation3' owned by user satarupa
</Annotation>
            </Version>
         </Simulation>
         <Simulation Name="Simulation4">
            <Annotation>cloned from 'Simulation4' owned by user satarupa
</Annotation>
            <SolverTaskDescription TaskType="Unsteady" UseSymbolicJacobian="false" Solver="IDA (Variable Order, Variable Time Step, ODE/DAE)">
               <TimeBound StartTime="0.0" EndTime="10.0" />
               <TimeStep DefaultTime="0.1" MinTime="1.0E-8" MaxTime="1.0" />
               <ErrorTolerance Absolut="1.0E-9" Relative="1.0E-9" />
               <OutputOptions KeepEvery="1" KeepAtMost="1000" />
            </SolverTaskDescription>
            <MathOverrides>
               <Constant Name="k">0.1</Constant>
            </MathOverrides>
            <Version Name="Simulation4" KeyValue="33248892" BranchId="33248893" Archived="0" Date="17-May-2009 20:17:57" FromVersionable="false">
               <Owner Name="Education" Identifier="30625624" />
               <GroupAccess Type="1" />
               <Annotation>cloned from 'Simulation4' owned by user satarupa
</Annotation>
            </Version>
         </Simulation>
         <Simulation Name="Simulation5">
            <Annotation>cloned from 'Simulation5' owned by user satarupa
</Annotation>
            <SolverTaskDescription TaskType="Unsteady" UseSymbolicJacobian="false" Solver="IDA (Variable Order, Variable Time Step, ODE/DAE)">
               <TimeBound StartTime="0.0" EndTime="1.0" />
               <TimeStep DefaultTime="0.1" MinTime="1.0E-8" MaxTime="1.0" />
               <ErrorTolerance Absolut="1.0E-9" Relative="1.0E-9" />
               <OutputOptions KeepEvery="1" KeepAtMost="1000" />
            </SolverTaskDescription>
            <MathOverrides>
               <Constant Name="k" ConstantArraySpec="1001">0.1 to 100.0, log, 4 values</Constant>
            </MathOverrides>
            <Version Name="Simulation5" KeyValue="33248895" BranchId="33248896" Archived="0" Date="17-May-2009 20:17:57" FromVersionable="false">
               <Owner Name="Education" Identifier="30625624" />
               <GroupAccess Type="1" />
               <Annotation>cloned from 'Simulation5' owned by user satarupa
</Annotation>
            </Version>
         </Simulation>
         <Version Name="compartmental" KeyValue="33248873" BranchId="33248874" Archived="0" Date="17-May-2009 20:17:56" FromVersionable="false">
            <Owner Name="Education" Identifier="30625624" />
            <GroupAccess Type="1" />
            <Annotation>cloned from 'compartmental' owned by user satarupa
</Annotation>
         </Version>
      </SimulationSpec>
      <Version Name="reactor" KeyValue="33248898" BranchId="33248899" Archived="0" Date="17-May-2009 20:17:57" FromVersionable="false">
         <Owner Name="Education" Identifier="30625624" />
         <GroupAccess Type="1" />
         <Annotation>cloned from 'reactor' owned by user satarupa
</Annotation>
      </Version>
   </BioModel>
</vcml>

